PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000234335
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 319aa    MW: 35864 Da    PI: 10.7874
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000234335genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.13.7e-28257315259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    +D+y+WrKYGqK++kgs +pr+ Y+C+s  gCp++k+ver+ edp+++++tY+geH+h+
  MDP0000234335 257 SDEYSWRKYGQKPIKGSLYPRGCYKCSSIrGCPARKRVERCLEDPSMLVVTYQGEHKHS 315
                    69************************9988****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-30244316IPR003657WRKY domain
PROSITE profilePS5081126.165251317IPR003657WRKY domain
SuperFamilySSF1182901.7E-24254316IPR003657WRKY domain
SMARTSM007749.8E-32256316IPR003657WRKY domain
PfamPF031061.3E-24258314IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MKGSYAPHXL KMHHMPPRLS TSLHALQSAT AMVDSAASKR DQIGHLYXLN KAWMAVLGTV  60
LSAETEVAVF KFKRVLSLLS HGRGRVRKLK KNLNPLPLPH NIFLDGPNYS DISPKPLQLL  120
PPTFPKTPHK EKVFLGSPVP KTKTLQQHQE ERTKLQFHPQ RVKYRDEMVF SGRNSGINLA  180
FDRSSSSCKT STTSARSFMS CLSIGGCAAT TGRDSFRLIG GVPRVPGQIS QQQRRKLKEK  240
RSYKVPAISD KISDIPSDEY SWRKYGQKPI KGSLYPRGCY KCSSIRGCPA RKRVERCLED  300
PSMLVVTYQG EHKHSQSAW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-162543151272WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009364483.11e-173PREDICTED: probable WRKY transcription factor 74
SwissprotQ93WU61e-61WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLM5VYW12e-90M5VYW1_PRUPE; Uncharacterized protein
STRINGPOPTR_0013s03990.11e-76(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.11e-54WRKY DNA-binding protein 74